###############################
#
#define settings
#
###############################
GET_SAMPLE_NAMES <- TRUE # if set to FALSE define it in the next line
#sample_names_user <- c()
unique <- params$unique # how many peptides should be at least necessary to identify a protein
# which types should be evaluated TRUE or FALSE could be used
RAZOR <- FALSE
UNIQUE <- FALSE
LFQ <- FALSE
if (any(grepl("RAZOR",params$protein_types))){
RAZOR <- TRUE
}
if (any(grepl("UNIQUE",params$protein_types))){
UNIQUE <- TRUE
}
if (any(grepl("LFQ",params$protein_types))){
LFQ <- TRUE
}
# define path of the proteinGroups.txt file(s)
path = params$path
# save files | options
# FALSE - results are not saved
# "RDS" - save results into R data file format
# "CSV" - save results into a csv file
SAVE <- "FALSE"
if (any(grepl("RDS",params$SAVE))){
SAVE <- "RDS"
}
if (any(grepl("CSV",params$SAVE))){
SAVE <- "CSV"
}
Filtering:
Potential.contaminant != "+" -> remove where
contaminants
Reverse != "+"-> remove where reverse =
+
Only.identified.by.site != "+" -> remove where
only identified by site = +
data[name] >= unique -> keep only
identifications which have greater or equal number (defined via variable
unique) of razor/unique peptides | typically
this is set to 1 or 2
Data analysis show the number of identified proteins and
the heatmap. In Summary the final results are visualized as
boxplot and a table with the summarized values is shown.
Filtering:
Potential.contaminant != "+" -> remove where
contaminants = +Reverse != "+"-> remove where reverse = +Only.identified.by.site != "+" -> remove where only
identified by site = +Then the log2of the LFQ intensities is calculated and
all -Inf values were substituted by NA using the following
command: lfq[lfq == -Inf] <- NA
Data analysis show the number of identified proteins and
the heatmap. In Summary the final results are visualized as
boxplot and a table with the summarized values is shown.
# load libraries
library(tidyverse)
library(dplyr)
library(pheatmap)
library(ggplot2)
library(reshape2)
library(plotly)
library(knitr)
# load functions
source("filtering_function.R")
print("loading sucessful")
## [1] "loading sucessful"
The txt-files of the defined folder are read in, processed and filtered automatically. This section shows the code, heatmaps for LFQ values and also some summary statistics.
########## read in all data with pattern .txt
# get file list
file.list <- list.files(path = path, pattern='*.txt')
# create file path
file.path <- paste(path,file.list,sep = "")
# read in files - for each file one variable is created - results are stored in a list
res_raw <- lapply(file.path, read.delim)
names(res_raw) <- file.list
########## get sample names
if (GET_SAMPLE_NAMES == TRUE){
#get sample names
tmp <- colnames(res_raw[[1]])
tmp <- tmp[grep("Razor...unique.peptides.",tmp)]
tmp <- sub(".*Razor...unique.peptides.", "",tmp)
sample_names_raw <- tmp
rm(tmp)
#create sample names
sample_names_razor <- paste("Razor...unique.peptides.",sample_names_raw, sep="")
sample_names_unique <- paste("Unique.peptides.",sample_names_raw, sep="")
sample_names_lfq <- paste("LFQ.intensity.",sample_names_raw, sep="")
} else {
for (i in 1:length(file.list)){
# rename columns
res_raw[[i]] <- res_raw[[i]] %>%
rename_with(~ paste("Razor_", sample_names_user, sep = ""),
starts_with("Razor...unique.peptides.")) %>%
rename_with(~ paste("Unique_", sample_names_user, sep = ""),
starts_with("Unique.peptides.")) %>%
rename_with(~ paste("LFQ_", sample_names_user, sep = ""),
starts_with("LFQ.intensity."))
# get column names
sample_names_razor <- colnames(res_raw[[i]][grep("Razor_",
colnames(res_raw[[i]]))])
sample_names_unique <- colnames(res_raw[[i]][grep("Unique_",
colnames(res_raw[[i]]))])
sample_names_lfq <- colnames(res_raw[[i]][grep("LFQ_",
colnames(res_raw[[i]]))])
}
}
########## create result data frame & result lists
# create data frame for razor
results_2gether_razor <- data.frame(matrix(ncol = length(sample_names_razor), nrow = length(file.list)))
row.names(results_2gether_razor) <- file.list
colnames(results_2gether_razor) <- sample_names_razor
#create data frame for unique
results_2gether_unique <- data.frame(matrix(ncol = length(sample_names_unique), nrow = length(file.list)))
row.names(results_2gether_unique) <- file.list
colnames(results_2gether_unique) <- sample_names_unique
#create data frame for lfq
results_2gether_lfq <- data.frame(matrix(ncol = length(sample_names_lfq), nrow = length(file.list)))
row.names(results_2gether_lfq) <- file.list
colnames(results_2gether_lfq) <- sample_names_lfq
#results lists
results_razor <- list()
results_unique <- list()
results_lfq <- list()
########## perform evaluation
if (RAZOR == TRUE) {
cat("\n")
cat("##","Razor","\n")
cat("\n")
for (x in file.list){
cat("\n")
cat("###",substring(x, 1, nchar(x)-4),"\n")
data_raw <- as.data.frame(res_raw[[x]])
data <- filtering(data_raw)
fasta <- data$Fasta.headers
results <- data.frame(matrix(ncol = length(sample_names_razor), nrow = nrow(data)))
colnames(results) <- sample_names_razor
i <- 0
for (i in 1:length(sample_names_razor)){
name <- sample_names_razor[i]
tmp <- (data[name] >= unique)
results[i] <- tmp
cat(name,"<br/>",sum(tmp, na.rm = TRUE),"<br/>")
}
results_razor[[x]] <- results
results_2gether_razor[x,] <- sapply(results,function(x)sum(x, na.rm = TRUE))
cat("\n")
#create heatmaps
paletteLength <- 2
myColor <- colorRampPalette(c("navy", "white",
"firebrick3"))(paletteLength)
data4pheatmap <- results
data4pheatmap <- results
data4pheatmap <- data4pheatmap*1
data4pheatmap[data4pheatmap == 0] <- NA
# remove NA rows
ind <- apply(data4pheatmap, 1, function(x) all(is.na(x)))
data4pheatmap_clear <- data4pheatmap[!ind,]
data4pheatmap_clear[is.na(data4pheatmap_clear)] <- 0
if (ncol(data4pheatmap_clear) < 2){
cat("\n")
cat("##"," No heatmap possible. Too less columns in the result
table.","\n")
} else {
pheatmap(data4pheatmap_clear,
legend_breaks = c(0,1),
color = myColor,
treeheight_row = 10,
angle_col ="45",
treeheight_col = 10,
legend = TRUE,
labels_row = rep("",nrow(data4pheatmap)),
labels_col = sample_names_raw)
cat("\n")
}
}
}
## Warning: `summarise_each_()` was deprecated in dplyr 0.7.0.
## ℹ Please use `across()` instead.
## ℹ The deprecated feature was likely used in the dplyr package.
## Please report the issue at <]8;;https://github.com/tidyverse/dplyr/issueshttps://github.com/tidyverse/dplyr/issues]8;;>.
## Warning: `funs()` was deprecated in dplyr 0.8.0.
## ℹ Please use a list of either functions or lambdas:
##
## # Simple named list: list(mean = mean, median = median)
##
## # Auto named with `tibble::lst()`: tibble::lst(mean, median)
##
## # Using lambdas list(~ mean(., trim = .2), ~ median(., na.rm = TRUE))
[1] “!NA values detected!” Only.identified.by.site 1 133
Razor…unique.peptides.a1
9
Razor…unique.peptides.a2
18
Razor…unique.peptides.a3
16
Razor…unique.peptides.a4
24
Razor…unique.peptides.a5
29
Razor…unique.peptides.a6
25
Razor…unique.peptides.a7
21
Razor…unique.peptides.b1
9
Razor…unique.peptides.b2
9
Razor…unique.peptides.b3
9
Razor…unique.peptides.b4
10
Razor…unique.peptides.b5
13
Razor…unique.peptides.b6
4
Razor…unique.peptides.b7
8
if (UNIQUE == TRUE) {
cat("\n")
cat("##","Unique","\n")
cat("\n")
for (x in file.list){
cat("\n")
cat("###",substring(x, 1, nchar(x)-4),"\n")
data_raw <- as.data.frame(res_raw[[x]])
data <- filtering(data_raw)
results <- data.frame(matrix(ncol = length(sample_names_unique), nrow = nrow(data)))
colnames(results) <- sample_names_unique
i <- 0
for (i in 1:length(sample_names_unique)){
name <- sample_names_unique[i]
tmp <- (data[name] >= unique)
results[i] <- tmp
cat(name,"<br/>",sum(tmp, na.rm = TRUE),"<br/>")
}
results_unique[[x]] <- results
results_2gether_unique[x,] <- sapply(results,function(x)sum(x, na.rm = TRUE))
cat("\n")
#create heatmaps
paletteLength <- 2
myColor <- colorRampPalette(c("navy", "white",
"firebrick3"))(paletteLength)
data4pheatmap <- results
data4pheatmap <- data4pheatmap*1
data4pheatmap[data4pheatmap == 0] <- NA
# remove NA rows
ind <- apply(data4pheatmap, 1, function(x) all(is.na(x)))
data4pheatmap_clear <- data4pheatmap[!ind,]
data4pheatmap_clear[is.na(data4pheatmap_clear)] <- 0
if (ncol(data4pheatmap) < 2){
cat("\n")
cat("##"," No heatmap possible. Too less columns in the result
table.","\n")
} else {
pheatmap(data4pheatmap_clear,
legend_breaks = c(0,1),
color = myColor,
treeheight_row = 10,
angle_col ="45",
treeheight_col = 10,
legend = TRUE,
labels_row = rep("",nrow(data4pheatmap)),
labels_col = sample_names_raw)
cat("\n")
}
}
}
[1] “!NA values detected!” Only.identified.by.site 1 133
Unique.peptides.a1
9
Unique.peptides.a2
17
Unique.peptides.a3
15
Unique.peptides.a4
24
Unique.peptides.a5
28
Unique.peptides.a6
24
Unique.peptides.a7
20
Unique.peptides.b1
8
Unique.peptides.b2
7
Unique.peptides.b3
8
Unique.peptides.b4
9
Unique.peptides.b5
12
Unique.peptides.b6
4
Unique.peptides.b7
8
if (LFQ == TRUE) {
cat("\n")
cat("##","LFQ","\n")
cat("\n")
for (x in file.list){
cat("\n")
cat("###",substring(x, 1, nchar(x)-4),"\n")
data_raw <- as.data.frame(res_raw[[x]])
data <- filtering(data_raw)
results <- data.frame(matrix(ncol = length(sample_names_lfq), nrow = nrow(data)))
colnames(results) <- sample_names_lfq
i <- 0
for (i in 1:length(sample_names_lfq)){
name <- sample_names_lfq[i]
tmp <- log2(data[name])
tmp[tmp == -Inf] <- NA
results[i] <- tmp
cat(name,"<br/>",sum(!is.na(tmp)),"<br/>")
}
results_lfq[[x]] <- results
results_2gether_lfq[x,] <- sapply(results,function(x)sum(!is.na(x)))
cat("\n")
#create heatmaps
paletteLength <- 50
myColor <- colorRampPalette(c("navy", "white",
"firebrick3"))(paletteLength)
data4pheatmap <- results
data4pheatmap <- results
data4pheatmap <- data4pheatmap*1
data4pheatmap[data4pheatmap == 0] <- NA
# remove NA rows
ind <- apply(data4pheatmap, 1, function(x) all(is.na(x)))
data4pheatmap_clear <- data4pheatmap[!ind,]
data4pheatmap_clear[is.na(data4pheatmap_clear)] <- 0
if (ncol(data4pheatmap) < 2){
cat("\n")
cat("##"," No heatmap possible. Too less columns in the result
table.","\n")
} else {
pheatmap(data4pheatmap_clear,
color = myColor,
treeheight_row = 10,
angle_col ="45",
treeheight_col = 10,
legend = TRUE,
labels_row = rep("",nrow(data4pheatmap)),
labels_col = sample_names_raw)
cat("\n")
}
}
}
# show summary
if (RAZOR == TRUE){
cat("\n")
cat("##"," Summary Razor","\n")
print(kable(results_2gether_razor))
ggplot(melt(results_2gether_razor),aes(x = variable, y = value)) +
geom_boxplot() +
xlab("Sample name") +
scale_x_discrete(labels = sample_names_raw) +
theme(axis.text.x = element_text(angle = 90)) +
labs(title = "Razor")
}
| Razor…unique.peptides.a1 | Razor…unique.peptides.a2 | Razor…unique.peptides.a3 | Razor…unique.peptides.a4 | Razor…unique.peptides.a5 | Razor…unique.peptides.a6 | Razor…unique.peptides.a7 | Razor…unique.peptides.b1 | Razor…unique.peptides.b2 | Razor…unique.peptides.b3 | Razor…unique.peptides.b4 | Razor…unique.peptides.b5 | Razor…unique.peptides.b6 | Razor…unique.peptides.b7 | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| proteinGroups.txt | 9 | 18 | 16 | 24 | 29 | 25 | 21 | 9 | 9 | 9 | 10 | 13 | 4 | 8 |
if (UNIQUE == TRUE){
cat("\n")
cat("##"," Summary Unique","\n")
print(kable(results_2gether_unique))
ggplot(melt(results_2gether_unique),aes(x = variable, y = value)) +
geom_boxplot() +
xlab("Sample name") +
scale_x_discrete(labels = sample_names_raw) +
theme(axis.text.x = element_text(angle = 90)) +
labs(title = "Unique")
}
| Unique.peptides.a1 | Unique.peptides.a2 | Unique.peptides.a3 | Unique.peptides.a4 | Unique.peptides.a5 | Unique.peptides.a6 | Unique.peptides.a7 | Unique.peptides.b1 | Unique.peptides.b2 | Unique.peptides.b3 | Unique.peptides.b4 | Unique.peptides.b5 | Unique.peptides.b6 | Unique.peptides.b7 | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| proteinGroups.txt | 9 | 17 | 15 | 24 | 28 | 24 | 20 | 8 | 7 | 8 | 9 | 12 | 4 | 8 |
if (LFQ == TRUE){
cat("\n")
cat("##"," Summary LFQ","\n")
print(kable(results_2gether_lfq))
ggplot(melt(results_2gether_lfq),aes(x = variable, y = value)) +
geom_boxplot() +
xlab("Sample name") +
scale_x_discrete(labels = sample_names_raw) +
theme(axis.text.x = element_text(angle = 90)) +
labs(title = "LFQ")
}
# save results
results_final <- data.frame(results_2gether_razor,results_2gether_unique,results_2gether_lfq)
# get rid of NA columns
results_final <- results_final[,colSums(is.na(results_final))<nrow(results_final)]
if (SAVE == "RDS"){
saveRDS(results_final, "./results_final.RDS")
} else if (SAVE == "CSV") {
write.csv2(results_final, "./results_final.csv")
}
p <- ggplot(melt(results_2gether_razor),aes(x = variable, y = value)) +
geom_boxplot() +
xlab("Sample name") +
scale_x_discrete(labels = sample_names_raw) +
theme(axis.text.x = element_text(angle = 90)) +
labs(title = "Razor")
ggplotly(p)
dat <- results_razor[[1]]
dat$fasta <- fasta
human <- grep("HUMAN",dat$fasta)
trica <- grep("TRICA",dat$fasta)
# write human oder trica in a column
for (i in 1:nrow(dat)){
if (grepl("HUMAN",dat$fasta[i])){
dat$org[i] <- "HUMAN"
}
else if (grepl("TRICA",dat$fasta[i])){
dat$org[i] <- "TRICA"
}
else {
dat$org[i] <- NA
}
}
dat$org[intersect(human,trica)] <- "HUMAN/TRICA"
dat4plot <- dat[,-c(ncol(dat)-1)]
dat4plot_long <- melt(dat4plot, id = c("org"))
tmp <- regmatches(dat4plot_long$variable,gregexpr("(?<=des.).*",dat4plot_long$variable,perl=TRUE))
tmp <- unlist(tmp)
dat4plot_long$variable <- tmp
p <- ggplot(data=dat4plot_long, aes(x=variable, y=as.numeric(value), fill=org)) +
stat_summary(fun.y = sum, geom = "bar", position = "dodge") +
xlab("sample name") +
ylab("counts")
ggplotly(p)
for (i in 1:(ncol(dat)-2)){
cat("\n")
text <- paste(" Fasta Headers - Sample",sample_names_raw[i])
cat("##",text,"\n")
cat("\"n")
print(dat$fasta[which(dat[,i])])
}
“n[1]”tr|A0A0C4DGN4|A0A0C4DGN4_HUMAN Zymogen granule protein 16
homolog B OS=Homo sapiens OX=9606 GN=ZG16B PE=1
SV=1;sp|Q96DA0|ZG16B_HUMAN Zymogen granule protein 16 homolog B OS=Homo
sapiens OX=9606 GN=ZG16B PE=1 SV=3”
[2] “tr|A0A286YEY1|A0A286YEY1_HUMAN Immunoglobulin heavy constant alpha
1 (Fragment) OS=Homo sapiens OX=9606 GN=IGHA1 PE=1
SV=1;sp|P01876|IGHA1_HUMAN Immunoglobulin heavy constant alpha 1 OS=Homo
sapiens OX=9606 GN=IGHA1 PE=1 SV=2;tr|A0A0G2JMB2|A0A0G2JMB2_HUMAN” [3]
“sp|P01037|CYTN_HUMAN Cystatin-SN OS=Homo sapiens OX=9606 GN=CST1 PE=1
SV=3;sp|P01036|CYTS_HUMAN Cystatin-S OS=Homo sapiens OX=9606 GN=CST4
PE=1 SV=3”
[4] “sp|P01833|PIGR_HUMAN Polymeric immunoglobulin receptor OS=Homo
sapiens OX=9606 GN=PIGR PE=1 SV=4”
[5] “sp|P02814|SMR3B_HUMAN Submaxillary gland androgen-regulated protein
3B OS=Homo sapiens OX=9606 GN=SMR3B PE=1 SV=2”
[6] “sp|P04080|CYTB_HUMAN Cystatin-B OS=Homo sapiens OX=9606 GN=CSTB
PE=1 SV=2;tr|A0A1W2PS52|A0A1W2PS52_HUMAN Cystatin-B OS=Homo sapiens
OX=9606 GN=CSTB PE=1 SV=1”
[7] “sp|P0DUB6|AMY1A_HUMAN Alpha-amylase 1A OS=Homo sapiens OX=9606
GN=AMY1A PE=1 SV=1;sp|P0DTE8|AMY1C_HUMAN Alpha-amylase 1C OS=Homo
sapiens OX=9606 GN=AMY1C PE=1 SV=1;sp|P0DTE7|AMY1B_HUMAN Alpha-amylase
1B OS=Homo sapiens OX=9606 GN=AMY1B PE=1 SV=1;sp|P19961|” [8]
“sp|P12273|PIP_HUMAN Prolactin-inducible protein OS=Homo sapiens OX=9606
GN=PIP PE=1 SV=1”
[9] “sp|Q96DR5|BPIA2_HUMAN BPI fold-containing family A member 2 OS=Homo
sapiens OX=9606 GN=BPIFA2 PE=1 SV=2”
“n [1]”tr|A0A0C4DGN4|A0A0C4DGN4_HUMAN Zymogen granule protein 16
homolog B OS=Homo sapiens OX=9606 GN=ZG16B PE=1
SV=1;sp|Q96DA0|ZG16B_HUMAN Zymogen granule protein 16 homolog B OS=Homo
sapiens OX=9606 GN=ZG16B PE=1 SV=3”
[2] “tr|A0A139WGR3|A0A139WGR3_TRICA Apolipophorins-like protein
OS=Tribolium castaneum OX=7070 GN=TcasGA2_TC034740 PE=4 SV=1”
[3] “tr|A0A139WNV6|A0A139WNV6_TRICA Elongation factor 1-alpha 1-like
Protein OS=Tribolium castaneum OX=7070 GN=TcasGA2_TC031771 PE=3
SV=1;tr|A0A7I2V3H3|A0A7I2V3H3_HUMAN Elongation factor 1-alpha OS=Homo
sapiens OX=9606 GN=EEF1A1 PE=1 SV=1;tr|A0A7I2V659|A0A7I2V6” [4]
“tr|A0A139WNX9|A0A139WNX9_TRICA Arginine kinase OS=Tribolium castaneum
OX=7070 GN=TcasGA2_TC030882 PE=2 SV=1”
[5] “tr|D2A4R3|D2A4R3_TRICA ATP synthase subunit beta OS=Tribolium
castaneum OX=7070 GN=TcasGA2_TC015322 PE=3 SV=1”
[6] “tr|D6W6D2|D6W6D2_TRICA Fatty acid synthase-like Protein
OS=Tribolium castaneum OX=7070 GN=TcasGA2_TC011522 PE=4 SV=1”
[7] “tr|D6W849|D6W849_TRICA Transketolase-like protein 2 OS=Tribolium
castaneum OX=7070 GN=TcasGA2_TC004789 PE=4 SV=1”
[8] “tr|D6WF19|D6WF19_TRICA Actin-87E-like Protein OS=Tribolium
castaneum OX=7070 GN=TcasGA2_TC003326 PE=3 SV=1”
[9] “tr|D6WJX6|D6WJX6_TRICA Vitellogenin domain-containing protein
OS=Tribolium castaneum OX=7070 GN=TcasGA2_TC013741 PE=4 SV=1”
[10] “tr|D6WSV2|D6WSV2_TRICA Tubulin beta chain OS=Tribolium castaneum
OX=7070 GN=TcasGA2_TC009589 PE=3 SV=1;tr|Q5ST81|Q5ST81_HUMAN Tubulin
beta chain OS=Homo sapiens OX=9606 GN=TUBB PE=1
SV=1;tr|Q5JP53|Q5JP53_HUMAN Tubulin beta chain OS=Homo sapiens OX=9606
GN=” [11] “tr|D6WUQ7|D6WUQ7_TRICA Larval serum protein 2-like Protein
OS=Tribolium castaneum OX=7070 GN=TcasGA2_TC005377 PE=4 SV=2”
[12] “tr|D6WUQ8|D6WUQ8_TRICA Larval serum protein 2-like Protein
OS=Tribolium castaneum OX=7070 GN=TcasGA2_TC005376 PE=4 SV=1”
[13] “tr|D6WUQ9|D6WUQ9_TRICA Larval serum protein 1 gamma chain-like
Protein OS=Tribolium castaneum OX=7070 GN=TcasGA2_TC006769 PE=4
SV=1”
[14] “tr|D6WV03|D6WV03_TRICA Glyceraldehyde-3-phosphate dehydrogenase
OS=Tribolium castaneum OX=7070 GN=TcasGA2_TC006170 PE=3 SV=1”
[15] “tr|D6X0M8|D6X0M8_TRICA Uncharacterized protein OS=Tribolium
castaneum OX=7070 GN=TcasGA2_TC012178 PE=4 SV=1”
[16] “sp|P01833|PIGR_HUMAN Polymeric immunoglobulin receptor OS=Homo
sapiens OX=9606 GN=PIGR PE=1 SV=4”
[17] “sp|P0DUB6|AMY1A_HUMAN Alpha-amylase 1A OS=Homo sapiens OX=9606
GN=AMY1A PE=1 SV=1;sp|P0DTE8|AMY1C_HUMAN Alpha-amylase 1C OS=Homo
sapiens OX=9606 GN=AMY1C PE=1 SV=1;sp|P0DTE7|AMY1B_HUMAN Alpha-amylase
1B OS=Homo sapiens OX=9606 GN=AMY1B PE=1 SV=1;sp|P19961|” [18]
“sp|P12273|PIP_HUMAN Prolactin-inducible protein OS=Homo sapiens OX=9606
GN=PIP PE=1 SV=1”
“n [1]”tr|A0A0C4DGN4|A0A0C4DGN4_HUMAN Zymogen granule protein 16
homolog B OS=Homo sapiens OX=9606 GN=ZG16B PE=1
SV=1;sp|Q96DA0|ZG16B_HUMAN Zymogen granule protein 16 homolog B OS=Homo
sapiens OX=9606 GN=ZG16B PE=1 SV=3”
[2] “tr|A0A139WAN8|A0A139WAN8_TRICA Tropomyosin-1, isoforms 9A/A/B-like
Protein OS=Tribolium castaneum OX=7070 GN=TcasGA2_TC031441 PE=3
SV=1;tr|A0A139WAL9|A0A139WAL9_TRICA Tropomyosin-1, isoforms 9A/A/B-like
Protein OS=Tribolium castaneum OX=7070 GN=TcasGA2_TC0” [3]
“tr|A0A139WAP9|A0A139WAP9_TRICA Tropomyosin-2-like Protein OS=Tribolium
castaneum OX=7070 GN=TcasGA2_TC011461 PE=3 SV=1”
[4] “tr|A0A139WGR3|A0A139WGR3_TRICA Apolipophorins-like protein
OS=Tribolium castaneum OX=7070 GN=TcasGA2_TC034740 PE=4 SV=1”
[5] “tr|A0A139WNX9|A0A139WNX9_TRICA Arginine kinase OS=Tribolium
castaneum OX=7070 GN=TcasGA2_TC030882 PE=2 SV=1”
[6] “tr|D6W849|D6W849_TRICA Transketolase-like protein 2 OS=Tribolium
castaneum OX=7070 GN=TcasGA2_TC004789 PE=4 SV=1”
[7] “tr|D6WF19|D6WF19_TRICA Actin-87E-like Protein OS=Tribolium
castaneum OX=7070 GN=TcasGA2_TC003326 PE=3 SV=1”
[8] “tr|D6WJX6|D6WJX6_TRICA Vitellogenin domain-containing protein
OS=Tribolium castaneum OX=7070 GN=TcasGA2_TC013741 PE=4 SV=1”
[9] “tr|D6WQ50|D6WQ50_TRICA Uncharacterized protein OS=Tribolium
castaneum OX=7070 GN=TcasGA2_TC009873 PE=4 SV=1”
[10] “tr|D6WUQ7|D6WUQ7_TRICA Larval serum protein 2-like Protein
OS=Tribolium castaneum OX=7070 GN=TcasGA2_TC005377 PE=4 SV=2”
[11] “tr|D6WUQ8|D6WUQ8_TRICA Larval serum protein 2-like Protein
OS=Tribolium castaneum OX=7070 GN=TcasGA2_TC005376 PE=4 SV=1”
[12] “tr|D6WUQ9|D6WUQ9_TRICA Larval serum protein 1 gamma chain-like
Protein OS=Tribolium castaneum OX=7070 GN=TcasGA2_TC006769 PE=4
SV=1”
[13] “tr|D6X073|D6X073_TRICA Uncharacterized protein OS=Tribolium
castaneum OX=7070 GN=TcasGA2_TC012207 PE=4
SV=1;tr|A0A139WC75|A0A139WC75_TRICA Uncharacterized protein OS=Tribolium
castaneum OX=7070 GN=TcasGA2_TC012207 PE=4 SV=1”
[14] “sp|P01833|PIGR_HUMAN Polymeric immunoglobulin receptor OS=Homo
sapiens OX=9606 GN=PIGR PE=1 SV=4”
[15] “sp|P0DUB6|AMY1A_HUMAN Alpha-amylase 1A OS=Homo sapiens OX=9606
GN=AMY1A PE=1 SV=1;sp|P0DTE8|AMY1C_HUMAN Alpha-amylase 1C OS=Homo
sapiens OX=9606 GN=AMY1C PE=1 SV=1;sp|P0DTE7|AMY1B_HUMAN Alpha-amylase
1B OS=Homo sapiens OX=9606 GN=AMY1B PE=1 SV=1;sp|P19961|” [16]
“sp|P12273|PIP_HUMAN Prolactin-inducible protein OS=Homo sapiens OX=9606
GN=PIP PE=1 SV=1”
“n [1]”tr|A0A139W9V5|A0A139W9V5_TRICA Histone H4 OS=Tribolium
castaneum OX=7070 GN=TcasGA2_TC034951 PE=3
SV=1;tr|A0A139W9W1|A0A139W9W1_TRICA Histone H4 OS=Tribolium castaneum
OX=7070 GN=TcasGA2_TC034951 PE=3 SV=1;sp|P62805|H4_HUMAN Histone H4
OS=Homo sapiens OX=9” [2] “tr|A0A139WAN8|A0A139WAN8_TRICA Tropomyosin-1,
isoforms 9A/A/B-like Protein OS=Tribolium castaneum OX=7070
GN=TcasGA2_TC031441 PE=3 SV=1;tr|A0A139WAL9|A0A139WAL9_TRICA
Tropomyosin-1, isoforms 9A/A/B-like Protein OS=Tribolium castaneum
OX=7070 GN=TcasGA2_TC0” [3] “tr|A0A139WAP6|A0A139WAP6_TRICA
Tropomyosin-2-like Protein OS=Tribolium castaneum OX=7070
GN=TcasGA2_TC031442 PE=3 SV=1”
[4] “tr|A0A139WAP9|A0A139WAP9_TRICA Tropomyosin-2-like Protein
OS=Tribolium castaneum OX=7070 GN=TcasGA2_TC011461 PE=3 SV=1”
[5] “tr|A0A139WDY2|A0A139WDY2_TRICA Myosin heavy chain, muscle-like
Protein OS=Tribolium castaneum OX=7070 GN=TcasGA2_TC034002 PE=3
SV=1;tr|A0A139WE98|A0A139WE98_TRICA Myosin heavy chain, muscle-like
Protein OS=Tribolium castaneum OX=7070 GN=TcasGA2_TC034002 PE” [6]
“tr|A0A139WE70|A0A139WE70_TRICA Myosin heavy chain, muscle-like Protein
OS=Tribolium castaneum OX=7070 GN=TcasGA2_TC034001 PE=3 SV=1”
[7] “tr|A0A139WGR3|A0A139WGR3_TRICA Apolipophorins-like protein
OS=Tribolium castaneum OX=7070 GN=TcasGA2_TC034740 PE=4 SV=1”
[8] “tr|A0A139WNX9|A0A139WNX9_TRICA Arginine kinase OS=Tribolium
castaneum OX=7070 GN=TcasGA2_TC030882 PE=2 SV=1”
[9] “tr|D2A2S3|D2A2S3_TRICA Uncharacterized protein OS=Tribolium
castaneum OX=7070 GN=TcasGA2_TC007015 PE=4 SV=1”
[10] “tr|D2A4R3|D2A4R3_TRICA ATP synthase subunit beta OS=Tribolium
castaneum OX=7070 GN=TcasGA2_TC015322 PE=3 SV=1”
[11] “tr|D6WF19|D6WF19_TRICA Actin-87E-like Protein OS=Tribolium
castaneum OX=7070 GN=TcasGA2_TC003326 PE=3 SV=1”
[12] “tr|D6WMB3|D6WMB3_TRICA Larval cuticle protein 8-like Protein
OS=Tribolium castaneum OX=7070 GN=TcasGA2_TC014500 PE=4 SV=1”
[13] “tr|D6WQ50|D6WQ50_TRICA Uncharacterized protein OS=Tribolium
castaneum OX=7070 GN=TcasGA2_TC009873 PE=4 SV=1”
[14] “tr|D6WRY0|D6WRY0_TRICA Cytochrome c oxidase subunit 4 OS=Tribolium
castaneum OX=7070 GN=TcasGA2_TC009512 PE=3 SV=1”
[15] “tr|D6WSI9|D6WSI9_TRICA ATP synthase subunit alpha OS=Tribolium
castaneum OX=7070 GN=TcasGA2_TC008728 PE=3 SV=1;sp|P25705|ATPA_HUMAN ATP
synthase subunit alpha, mitochondrial OS=Homo sapiens OX=9606 GN=ATP5F1A
PE=1 SV=1”
[16] “tr|D6WUQ7|D6WUQ7_TRICA Larval serum protein 2-like Protein
OS=Tribolium castaneum OX=7070 GN=TcasGA2_TC005377 PE=4 SV=2”
[17] “tr|D6WUQ8|D6WUQ8_TRICA Larval serum protein 2-like Protein
OS=Tribolium castaneum OX=7070 GN=TcasGA2_TC005376 PE=4 SV=1”
[18] “tr|D6WUQ9|D6WUQ9_TRICA Larval serum protein 1 gamma chain-like
Protein OS=Tribolium castaneum OX=7070 GN=TcasGA2_TC006769 PE=4
SV=1”
[19] “tr|D6WZH8|D6WZH8_TRICA Calcium-transporting ATPase OS=Tribolium
castaneum OX=7070 GN=TcasGA2_TC012671 PE=3 SV=1”
[20] “tr|D6WZP8|D6WZP8_TRICA Troponin C, isoform 2-like Protein
OS=Tribolium castaneum OX=7070 GN=TcasGA2_TC012704 PE=4 SV=1”
[21] “tr|D6X073|D6X073_TRICA Uncharacterized protein OS=Tribolium
castaneum OX=7070 GN=TcasGA2_TC012207 PE=4
SV=1;tr|A0A139WC75|A0A139WC75_TRICA Uncharacterized protein OS=Tribolium
castaneum OX=7070 GN=TcasGA2_TC012207 PE=4 SV=1”
[22] “sp|P01833|PIGR_HUMAN Polymeric immunoglobulin receptor OS=Homo
sapiens OX=9606 GN=PIGR PE=1 SV=4”
[23] “sp|P0DUB6|AMY1A_HUMAN Alpha-amylase 1A OS=Homo sapiens OX=9606
GN=AMY1A PE=1 SV=1;sp|P0DTE8|AMY1C_HUMAN Alpha-amylase 1C OS=Homo
sapiens OX=9606 GN=AMY1C PE=1 SV=1;sp|P0DTE7|AMY1B_HUMAN Alpha-amylase
1B OS=Homo sapiens OX=9606 GN=AMY1B PE=1 SV=1;sp|P19961|” [24]
“sp|P12273|PIP_HUMAN Prolactin-inducible protein OS=Homo sapiens OX=9606
GN=PIP PE=1 SV=1”
“n [1]”tr|A0A139WAN8|A0A139WAN8_TRICA Tropomyosin-1, isoforms
9A/A/B-like Protein OS=Tribolium castaneum OX=7070 GN=TcasGA2_TC031441
PE=3 SV=1;tr|A0A139WAL9|A0A139WAL9_TRICA Tropomyosin-1, isoforms
9A/A/B-like Protein OS=Tribolium castaneum OX=7070 GN=TcasGA2_TC0” [2]
“tr|A0A139WAP9|A0A139WAP9_TRICA Tropomyosin-2-like Protein OS=Tribolium
castaneum OX=7070 GN=TcasGA2_TC011461 PE=3 SV=1”
[3] “tr|A0A139WDY2|A0A139WDY2_TRICA Myosin heavy chain, muscle-like
Protein OS=Tribolium castaneum OX=7070 GN=TcasGA2_TC034002 PE=3
SV=1;tr|A0A139WE98|A0A139WE98_TRICA Myosin heavy chain, muscle-like
Protein OS=Tribolium castaneum OX=7070 GN=TcasGA2_TC034002 PE” [4]
“tr|A0A139WE70|A0A139WE70_TRICA Myosin heavy chain, muscle-like Protein
OS=Tribolium castaneum OX=7070 GN=TcasGA2_TC034001 PE=3 SV=1”
[5] “tr|A0A139WGR3|A0A139WGR3_TRICA Apolipophorins-like protein
OS=Tribolium castaneum OX=7070 GN=TcasGA2_TC034740 PE=4 SV=1”
[6] “tr|A0A139WIM0|A0A139WIM0_TRICA Probable methylmalonate-semialdehyde
dehydrogenase [acylating], mitochondrial OS=Tribolium castaneum OX=7070
GN=TcasGA2_TC032736 PE=3 SV=1”
[7] “tr|A0A139WNV6|A0A139WNV6_TRICA Elongation factor 1-alpha 1-like
Protein OS=Tribolium castaneum OX=7070 GN=TcasGA2_TC031771 PE=3
SV=1;tr|A0A7I2V3H3|A0A7I2V3H3_HUMAN Elongation factor 1-alpha OS=Homo
sapiens OX=9606 GN=EEF1A1 PE=1 SV=1;tr|A0A7I2V659|A0A7I2V6” [8]
“tr|A0A139WNX9|A0A139WNX9_TRICA Arginine kinase OS=Tribolium castaneum
OX=7070 GN=TcasGA2_TC030882 PE=2 SV=1”
[9] “tr|A0A139WP69|A0A139WP69_TRICA Filamin-A-like Protein OS=Tribolium
castaneum OX=7070 GN=TcasGA2_TC005186 PE=3 SV=1;tr|D6W7G0|D6W7G0_TRICA
Filamin-A-like Protein OS=Tribolium castaneum OX=7070
GN=TcasGA2_TC005186 PE=3 SV=2”
[10] “tr|D2A4R3|D2A4R3_TRICA ATP synthase subunit beta OS=Tribolium
castaneum OX=7070 GN=TcasGA2_TC015322 PE=3 SV=1”
[11] “tr|D2A663|D2A663_TRICA Malate dehydrogenase OS=Tribolium castaneum
OX=7070 GN=TcasGA2_TC015050 PE=3 SV=1”
[12] “tr|D6W6D2|D6W6D2_TRICA Fatty acid synthase-like Protein
OS=Tribolium castaneum OX=7070 GN=TcasGA2_TC011522 PE=4 SV=1”
[13] “tr|D6W849|D6W849_TRICA Transketolase-like protein 2 OS=Tribolium
castaneum OX=7070 GN=TcasGA2_TC004789 PE=4 SV=1”
[14] “tr|D6WF19|D6WF19_TRICA Actin-87E-like Protein OS=Tribolium
castaneum OX=7070 GN=TcasGA2_TC003326 PE=3 SV=1”
[15] “tr|D6WJX6|D6WJX6_TRICA Vitellogenin domain-containing protein
OS=Tribolium castaneum OX=7070 GN=TcasGA2_TC013741 PE=4 SV=1”
[16] “tr|D6WSI9|D6WSI9_TRICA ATP synthase subunit alpha OS=Tribolium
castaneum OX=7070 GN=TcasGA2_TC008728 PE=3 SV=1;sp|P25705|ATPA_HUMAN ATP
synthase subunit alpha, mitochondrial OS=Homo sapiens OX=9606 GN=ATP5F1A
PE=1 SV=1”
[17] “tr|D6WSV2|D6WSV2_TRICA Tubulin beta chain OS=Tribolium castaneum
OX=7070 GN=TcasGA2_TC009589 PE=3 SV=1;tr|Q5ST81|Q5ST81_HUMAN Tubulin
beta chain OS=Homo sapiens OX=9606 GN=TUBB PE=1
SV=1;tr|Q5JP53|Q5JP53_HUMAN Tubulin beta chain OS=Homo sapiens OX=9606
GN=” [18] “tr|D6WUQ7|D6WUQ7_TRICA Larval serum protein 2-like Protein
OS=Tribolium castaneum OX=7070 GN=TcasGA2_TC005377 PE=4 SV=2”
[19] “tr|D6WUQ8|D6WUQ8_TRICA Larval serum protein 2-like Protein
OS=Tribolium castaneum OX=7070 GN=TcasGA2_TC005376 PE=4 SV=1”
[20] “tr|D6WUQ9|D6WUQ9_TRICA Larval serum protein 1 gamma chain-like
Protein OS=Tribolium castaneum OX=7070 GN=TcasGA2_TC006769 PE=4
SV=1”
[21] “tr|D6WV03|D6WV03_TRICA Glyceraldehyde-3-phosphate dehydrogenase
OS=Tribolium castaneum OX=7070 GN=TcasGA2_TC006170 PE=3 SV=1”
[22] “tr|D6WW81|D6WW81_TRICA Uncharacterized protein OS=Tribolium
castaneum OX=7070 GN=TcasGA2_TC005795 PE=4 SV=1”
[23] “tr|D6X009|D6X009_TRICA 2-phospho-D-glycerate hydro-lyase
OS=Tribolium castaneum OX=7070 GN=TcasGA2_TC012754 PE=3
SV=1;tr|D6X018|D6X018_TRICA 2-phospho-D-glycerate hydro-lyase
OS=Tribolium castaneum OX=7070 GN=TcasGA2_TC011729 PE=3
SV=1;tr|D6X017|D6X017_TRI” [24] “tr|D6X073|D6X073_TRICA Uncharacterized
protein OS=Tribolium castaneum OX=7070 GN=TcasGA2_TC012207 PE=4
SV=1;tr|A0A139WC75|A0A139WC75_TRICA Uncharacterized protein OS=Tribolium
castaneum OX=7070 GN=TcasGA2_TC012207 PE=4 SV=1”
[25] “tr|D6X0M8|D6X0M8_TRICA Uncharacterized protein OS=Tribolium
castaneum OX=7070 GN=TcasGA2_TC012178 PE=4 SV=1”
[26] “sp|Q71U36|TBA1A_HUMAN Tubulin alpha-1A chain OS=Homo sapiens
OX=9606 GN=TUBA1A PE=1 SV=1;sp|Q6PEY2|TBA3E_HUMAN Tubulin alpha-3E chain
OS=Homo sapiens OX=9606 GN=TUBA3E PE=1 SV=2;sp|P0DPH7|TBA3C_HUMAN
Tubulin alpha-3C chain OS=Homo sapiens OX=9606 GN=TUBA3C” [27]
“sp|P01833|PIGR_HUMAN Polymeric immunoglobulin receptor OS=Homo sapiens
OX=9606 GN=PIGR PE=1 SV=4”
[28] “sp|P0DUB6|AMY1A_HUMAN Alpha-amylase 1A OS=Homo sapiens OX=9606
GN=AMY1A PE=1 SV=1;sp|P0DTE8|AMY1C_HUMAN Alpha-amylase 1C OS=Homo
sapiens OX=9606 GN=AMY1C PE=1 SV=1;sp|P0DTE7|AMY1B_HUMAN Alpha-amylase
1B OS=Homo sapiens OX=9606 GN=AMY1B PE=1 SV=1;sp|P19961|” [29]
“sp|P12273|PIP_HUMAN Prolactin-inducible protein OS=Homo sapiens OX=9606
GN=PIP PE=1 SV=1”
“n [1]”tr|A0A139W9V5|A0A139W9V5_TRICA Histone H4 OS=Tribolium
castaneum OX=7070 GN=TcasGA2_TC034951 PE=3
SV=1;tr|A0A139W9W1|A0A139W9W1_TRICA Histone H4 OS=Tribolium castaneum
OX=7070 GN=TcasGA2_TC034951 PE=3 SV=1;sp|P62805|H4_HUMAN Histone H4
OS=Homo sapiens OX=9” [2] “tr|A0A139WAN8|A0A139WAN8_TRICA Tropomyosin-1,
isoforms 9A/A/B-like Protein OS=Tribolium castaneum OX=7070
GN=TcasGA2_TC031441 PE=3 SV=1;tr|A0A139WAL9|A0A139WAL9_TRICA
Tropomyosin-1, isoforms 9A/A/B-like Protein OS=Tribolium castaneum
OX=7070 GN=TcasGA2_TC0” [3] “tr|A0A139WAP9|A0A139WAP9_TRICA
Tropomyosin-2-like Protein OS=Tribolium castaneum OX=7070
GN=TcasGA2_TC011461 PE=3 SV=1”
[4] “tr|A0A139WDY2|A0A139WDY2_TRICA Myosin heavy chain, muscle-like
Protein OS=Tribolium castaneum OX=7070 GN=TcasGA2_TC034002 PE=3
SV=1;tr|A0A139WE98|A0A139WE98_TRICA Myosin heavy chain, muscle-like
Protein OS=Tribolium castaneum OX=7070 GN=TcasGA2_TC034002 PE” [5]
“tr|A0A139WE70|A0A139WE70_TRICA Myosin heavy chain, muscle-like Protein
OS=Tribolium castaneum OX=7070 GN=TcasGA2_TC034001 PE=3 SV=1”
[6] “tr|A0A139WGR3|A0A139WGR3_TRICA Apolipophorins-like protein
OS=Tribolium castaneum OX=7070 GN=TcasGA2_TC034740 PE=4 SV=1”
[7] “tr|A0A139WNX9|A0A139WNX9_TRICA Arginine kinase OS=Tribolium
castaneum OX=7070 GN=TcasGA2_TC030882 PE=2 SV=1”
[8] “tr|D2A2S3|D2A2S3_TRICA Uncharacterized protein OS=Tribolium
castaneum OX=7070 GN=TcasGA2_TC007015 PE=4 SV=1”
[9] “tr|D2A4R3|D2A4R3_TRICA ATP synthase subunit beta OS=Tribolium
castaneum OX=7070 GN=TcasGA2_TC015322 PE=3 SV=1”
[10] “tr|D6W849|D6W849_TRICA Transketolase-like protein 2 OS=Tribolium
castaneum OX=7070 GN=TcasGA2_TC004789 PE=4 SV=1”
[11] “tr|D6WF19|D6WF19_TRICA Actin-87E-like Protein OS=Tribolium
castaneum OX=7070 GN=TcasGA2_TC003326 PE=3 SV=1”
[12] “tr|D6WMB3|D6WMB3_TRICA Larval cuticle protein 8-like Protein
OS=Tribolium castaneum OX=7070 GN=TcasGA2_TC014500 PE=4 SV=1”
[13] “tr|D6WQ50|D6WQ50_TRICA Uncharacterized protein OS=Tribolium
castaneum OX=7070 GN=TcasGA2_TC009873 PE=4 SV=1”
[14] “tr|D6WRY0|D6WRY0_TRICA Cytochrome c oxidase subunit 4 OS=Tribolium
castaneum OX=7070 GN=TcasGA2_TC009512 PE=3 SV=1”
[15] “tr|D6WSI9|D6WSI9_TRICA ATP synthase subunit alpha OS=Tribolium
castaneum OX=7070 GN=TcasGA2_TC008728 PE=3 SV=1;sp|P25705|ATPA_HUMAN ATP
synthase subunit alpha, mitochondrial OS=Homo sapiens OX=9606 GN=ATP5F1A
PE=1 SV=1”
[16] “tr|D6WUQ7|D6WUQ7_TRICA Larval serum protein 2-like Protein
OS=Tribolium castaneum OX=7070 GN=TcasGA2_TC005377 PE=4 SV=2”
[17] “tr|D6WUQ8|D6WUQ8_TRICA Larval serum protein 2-like Protein
OS=Tribolium castaneum OX=7070 GN=TcasGA2_TC005376 PE=4 SV=1”
[18] “tr|D6WUQ9|D6WUQ9_TRICA Larval serum protein 1 gamma chain-like
Protein OS=Tribolium castaneum OX=7070 GN=TcasGA2_TC006769 PE=4
SV=1”
[19] “tr|D6WZH8|D6WZH8_TRICA Calcium-transporting ATPase OS=Tribolium
castaneum OX=7070 GN=TcasGA2_TC012671 PE=3 SV=1”
[20] “tr|D6X009|D6X009_TRICA 2-phospho-D-glycerate hydro-lyase
OS=Tribolium castaneum OX=7070 GN=TcasGA2_TC012754 PE=3
SV=1;tr|D6X018|D6X018_TRICA 2-phospho-D-glycerate hydro-lyase
OS=Tribolium castaneum OX=7070 GN=TcasGA2_TC011729 PE=3
SV=1;tr|D6X017|D6X017_TRI” [21] “tr|D6X073|D6X073_TRICA Uncharacterized
protein OS=Tribolium castaneum OX=7070 GN=TcasGA2_TC012207 PE=4
SV=1;tr|A0A139WC75|A0A139WC75_TRICA Uncharacterized protein OS=Tribolium
castaneum OX=7070 GN=TcasGA2_TC012207 PE=4 SV=1”
[22] “sp|P01833|PIGR_HUMAN Polymeric immunoglobulin receptor OS=Homo
sapiens OX=9606 GN=PIGR PE=1 SV=4”
[23] “sp|P0DUB6|AMY1A_HUMAN Alpha-amylase 1A OS=Homo sapiens OX=9606
GN=AMY1A PE=1 SV=1;sp|P0DTE8|AMY1C_HUMAN Alpha-amylase 1C OS=Homo
sapiens OX=9606 GN=AMY1C PE=1 SV=1;sp|P0DTE7|AMY1B_HUMAN Alpha-amylase
1B OS=Homo sapiens OX=9606 GN=AMY1B PE=1 SV=1;sp|P19961|” [24]
“sp|P12273|PIP_HUMAN Prolactin-inducible protein OS=Homo sapiens OX=9606
GN=PIP PE=1 SV=1”
[25] “sp|Q96DR5|BPIA2_HUMAN BPI fold-containing family A member 2
OS=Homo sapiens OX=9606 GN=BPIFA2 PE=1 SV=2”
“n [1]”tr|A0A139W9V5|A0A139W9V5_TRICA Histone H4 OS=Tribolium
castaneum OX=7070 GN=TcasGA2_TC034951 PE=3
SV=1;tr|A0A139W9W1|A0A139W9W1_TRICA Histone H4 OS=Tribolium castaneum
OX=7070 GN=TcasGA2_TC034951 PE=3 SV=1;sp|P62805|H4_HUMAN Histone H4
OS=Homo sapiens OX=9” [2] “tr|A0A139WAN8|A0A139WAN8_TRICA Tropomyosin-1,
isoforms 9A/A/B-like Protein OS=Tribolium castaneum OX=7070
GN=TcasGA2_TC031441 PE=3 SV=1;tr|A0A139WAL9|A0A139WAL9_TRICA
Tropomyosin-1, isoforms 9A/A/B-like Protein OS=Tribolium castaneum
OX=7070 GN=TcasGA2_TC0” [3] “tr|A0A139WAP9|A0A139WAP9_TRICA
Tropomyosin-2-like Protein OS=Tribolium castaneum OX=7070
GN=TcasGA2_TC011461 PE=3 SV=1”
[4] “tr|A0A139WDY2|A0A139WDY2_TRICA Myosin heavy chain, muscle-like
Protein OS=Tribolium castaneum OX=7070 GN=TcasGA2_TC034002 PE=3
SV=1;tr|A0A139WE98|A0A139WE98_TRICA Myosin heavy chain, muscle-like
Protein OS=Tribolium castaneum OX=7070 GN=TcasGA2_TC034002 PE” [5]
“tr|A0A139WE70|A0A139WE70_TRICA Myosin heavy chain, muscle-like Protein
OS=Tribolium castaneum OX=7070 GN=TcasGA2_TC034001 PE=3 SV=1”
[6] “tr|A0A139WHF4|A0A139WHF4_TRICA Uncharacterized protein OS=Tribolium
castaneum OX=7070 GN=TcasGA2_TC033228 PE=4 SV=1”
[7] “tr|D2A4R3|D2A4R3_TRICA ATP synthase subunit beta OS=Tribolium
castaneum OX=7070 GN=TcasGA2_TC015322 PE=3 SV=1”
[8] “tr|D6WF19|D6WF19_TRICA Actin-87E-like Protein OS=Tribolium
castaneum OX=7070 GN=TcasGA2_TC003326 PE=3 SV=1”
[9] “tr|D6WMB3|D6WMB3_TRICA Larval cuticle protein 8-like Protein
OS=Tribolium castaneum OX=7070 GN=TcasGA2_TC014500 PE=4 SV=1”
[10] “tr|D6WNL2|D6WNL2_TRICA ATP synthase subunit delta,
mitochondrial-like Protein OS=Tribolium castaneum OX=7070
GN=TcasGA2_TC013931 PE=3 SV=1”
[11] “tr|D6WQ50|D6WQ50_TRICA Uncharacterized protein OS=Tribolium
castaneum OX=7070 GN=TcasGA2_TC009873 PE=4 SV=1”
[12] “tr|D6WRT5|D6WRT5_TRICA Pupal cuticle protein Edg-84A-like Protein
OS=Tribolium castaneum OX=7070 GN=TcasGA2_TC010057 PE=4
SV=1;tr|D6WRT1|D6WRT1_TRICA Uncharacterized protein OS=Tribolium
castaneum OX=7070 GN=TcasGA2_TC010054 PE=4 SV=1”
[13] “tr|D6WUQ7|D6WUQ7_TRICA Larval serum protein 2-like Protein
OS=Tribolium castaneum OX=7070 GN=TcasGA2_TC005377 PE=4 SV=2”
[14] “tr|D6WUQ8|D6WUQ8_TRICA Larval serum protein 2-like Protein
OS=Tribolium castaneum OX=7070 GN=TcasGA2_TC005376 PE=4 SV=1”
[15] “tr|D6WUQ9|D6WUQ9_TRICA Larval serum protein 1 gamma chain-like
Protein OS=Tribolium castaneum OX=7070 GN=TcasGA2_TC006769 PE=4
SV=1”
[16] “tr|D6X073|D6X073_TRICA Uncharacterized protein OS=Tribolium
castaneum OX=7070 GN=TcasGA2_TC012207 PE=4
SV=1;tr|A0A139WC75|A0A139WC75_TRICA Uncharacterized protein OS=Tribolium
castaneum OX=7070 GN=TcasGA2_TC012207 PE=4 SV=1”
[17] “tr|D6X0X9|D6X0X9_TRICA Uncharacterized protein OS=Tribolium
castaneum OX=7070 GN=TcasGA2_TC012828 PE=4 SV=1”
[18] “tr|D7ELA3|D7ELA3_TRICA Uncharacterized protein OS=Tribolium
castaneum OX=7070 GN=TcasGA2_TC008553 PE=4 SV=1”
[19] “sp|P01833|PIGR_HUMAN Polymeric immunoglobulin receptor OS=Homo
sapiens OX=9606 GN=PIGR PE=1 SV=4”
[20] “sp|P0DUB6|AMY1A_HUMAN Alpha-amylase 1A OS=Homo sapiens OX=9606
GN=AMY1A PE=1 SV=1;sp|P0DTE8|AMY1C_HUMAN Alpha-amylase 1C OS=Homo
sapiens OX=9606 GN=AMY1C PE=1 SV=1;sp|P0DTE7|AMY1B_HUMAN Alpha-amylase
1B OS=Homo sapiens OX=9606 GN=AMY1B PE=1 SV=1;sp|P19961|” [21]
“sp|P12273|PIP_HUMAN Prolactin-inducible protein OS=Homo sapiens OX=9606
GN=PIP PE=1 SV=1”
“n[1]”tr|A0A139WGR3|A0A139WGR3_TRICA Apolipophorins-like protein
OS=Tribolium castaneum OX=7070 GN=TcasGA2_TC034740 PE=4 SV=1”
[2] “tr|A0A139WNX9|A0A139WNX9_TRICA Arginine kinase OS=Tribolium
castaneum OX=7070 GN=TcasGA2_TC030882 PE=2 SV=1”
[3] “tr|D6W849|D6W849_TRICA Transketolase-like protein 2 OS=Tribolium
castaneum OX=7070 GN=TcasGA2_TC004789 PE=4 SV=1”
[4] “tr|D6WF19|D6WF19_TRICA Actin-87E-like Protein OS=Tribolium
castaneum OX=7070 GN=TcasGA2_TC003326 PE=3 SV=1”
[5] “tr|D6WJX6|D6WJX6_TRICA Vitellogenin domain-containing protein
OS=Tribolium castaneum OX=7070 GN=TcasGA2_TC013741 PE=4 SV=1”
[6] “tr|D6WUQ7|D6WUQ7_TRICA Larval serum protein 2-like Protein
OS=Tribolium castaneum OX=7070 GN=TcasGA2_TC005377 PE=4 SV=2”
[7] “tr|D6WUQ8|D6WUQ8_TRICA Larval serum protein 2-like Protein
OS=Tribolium castaneum OX=7070 GN=TcasGA2_TC005376 PE=4 SV=1”
[8] “tr|D6WUQ9|D6WUQ9_TRICA Larval serum protein 1 gamma chain-like
Protein OS=Tribolium castaneum OX=7070 GN=TcasGA2_TC006769 PE=4
SV=1”
[9] “sp|P0DUB6|AMY1A_HUMAN Alpha-amylase 1A OS=Homo sapiens OX=9606
GN=AMY1A PE=1 SV=1;sp|P0DTE8|AMY1C_HUMAN Alpha-amylase 1C OS=Homo
sapiens OX=9606 GN=AMY1C PE=1 SV=1;sp|P0DTE7|AMY1B_HUMAN Alpha-amylase
1B OS=Homo sapiens OX=9606 GN=AMY1B PE=1 SV=1;sp|P19961|”
“n[1]”tr|A0A139WAN8|A0A139WAN8_TRICA Tropomyosin-1, isoforms
9A/A/B-like Protein OS=Tribolium castaneum OX=7070 GN=TcasGA2_TC031441
PE=3 SV=1;tr|A0A139WAL9|A0A139WAL9_TRICA Tropomyosin-1, isoforms
9A/A/B-like Protein OS=Tribolium castaneum OX=7070 GN=TcasGA2_TC0” [2]
“tr|A0A139WAP9|A0A139WAP9_TRICA Tropomyosin-2-like Protein OS=Tribolium
castaneum OX=7070 GN=TcasGA2_TC011461 PE=3 SV=1”
[3] “tr|D6WF19|D6WF19_TRICA Actin-87E-like Protein OS=Tribolium
castaneum OX=7070 GN=TcasGA2_TC003326 PE=3 SV=1”
[4] “tr|D6WQ50|D6WQ50_TRICA Uncharacterized protein OS=Tribolium
castaneum OX=7070 GN=TcasGA2_TC009873 PE=4 SV=1”
[5] “tr|D6WUQ7|D6WUQ7_TRICA Larval serum protein 2-like Protein
OS=Tribolium castaneum OX=7070 GN=TcasGA2_TC005377 PE=4 SV=2”
[6] “tr|D6WUQ8|D6WUQ8_TRICA Larval serum protein 2-like Protein
OS=Tribolium castaneum OX=7070 GN=TcasGA2_TC005376 PE=4 SV=1”
[7] “tr|D6WUQ9|D6WUQ9_TRICA Larval serum protein 1 gamma chain-like
Protein OS=Tribolium castaneum OX=7070 GN=TcasGA2_TC006769 PE=4
SV=1”
[8] “tr|D6X073|D6X073_TRICA Uncharacterized protein OS=Tribolium
castaneum OX=7070 GN=TcasGA2_TC012207 PE=4
SV=1;tr|A0A139WC75|A0A139WC75_TRICA Uncharacterized protein OS=Tribolium
castaneum OX=7070 GN=TcasGA2_TC012207 PE=4 SV=1”
[9] “sp|P0DUB6|AMY1A_HUMAN Alpha-amylase 1A OS=Homo sapiens OX=9606
GN=AMY1A PE=1 SV=1;sp|P0DTE8|AMY1C_HUMAN Alpha-amylase 1C OS=Homo
sapiens OX=9606 GN=AMY1C PE=1 SV=1;sp|P0DTE7|AMY1B_HUMAN Alpha-amylase
1B OS=Homo sapiens OX=9606 GN=AMY1B PE=1 SV=1;sp|P19961|”
“n[1]”tr|A0A139WAN8|A0A139WAN8_TRICA Tropomyosin-1, isoforms
9A/A/B-like Protein OS=Tribolium castaneum OX=7070 GN=TcasGA2_TC031441
PE=3 SV=1;tr|A0A139WAL9|A0A139WAL9_TRICA Tropomyosin-1, isoforms
9A/A/B-like Protein OS=Tribolium castaneum OX=7070 GN=TcasGA2_TC0” [2]
“tr|A0A139WAP9|A0A139WAP9_TRICA Tropomyosin-2-like Protein OS=Tribolium
castaneum OX=7070 GN=TcasGA2_TC011461 PE=3 SV=1”
[3] “tr|A0A139WDY2|A0A139WDY2_TRICA Myosin heavy chain, muscle-like
Protein OS=Tribolium castaneum OX=7070 GN=TcasGA2_TC034002 PE=3
SV=1;tr|A0A139WE98|A0A139WE98_TRICA Myosin heavy chain, muscle-like
Protein OS=Tribolium castaneum OX=7070 GN=TcasGA2_TC034002 PE” [4]
“tr|A0A139WE70|A0A139WE70_TRICA Myosin heavy chain, muscle-like Protein
OS=Tribolium castaneum OX=7070 GN=TcasGA2_TC034001 PE=3 SV=1”
[5] “tr|D2A4R3|D2A4R3_TRICA ATP synthase subunit beta OS=Tribolium
castaneum OX=7070 GN=TcasGA2_TC015322 PE=3 SV=1”
[6] “tr|D6WF19|D6WF19_TRICA Actin-87E-like Protein OS=Tribolium
castaneum OX=7070 GN=TcasGA2_TC003326 PE=3 SV=1”
[7] “tr|D6WUQ8|D6WUQ8_TRICA Larval serum protein 2-like Protein
OS=Tribolium castaneum OX=7070 GN=TcasGA2_TC005376 PE=4 SV=1”
[8] “tr|D6WUQ9|D6WUQ9_TRICA Larval serum protein 1 gamma chain-like
Protein OS=Tribolium castaneum OX=7070 GN=TcasGA2_TC006769 PE=4
SV=1”
[9] “tr|D6X073|D6X073_TRICA Uncharacterized protein OS=Tribolium
castaneum OX=7070 GN=TcasGA2_TC012207 PE=4
SV=1;tr|A0A139WC75|A0A139WC75_TRICA Uncharacterized protein OS=Tribolium
castaneum OX=7070 GN=TcasGA2_TC012207 PE=4 SV=1”
“n [1]”tr|A0A139WGR3|A0A139WGR3_TRICA Apolipophorins-like protein
OS=Tribolium castaneum OX=7070 GN=TcasGA2_TC034740 PE=4 SV=1”
[2] “tr|A0A139WNV6|A0A139WNV6_TRICA Elongation factor 1-alpha 1-like
Protein OS=Tribolium castaneum OX=7070 GN=TcasGA2_TC031771 PE=3
SV=1;tr|A0A7I2V3H3|A0A7I2V3H3_HUMAN Elongation factor 1-alpha OS=Homo
sapiens OX=9606 GN=EEF1A1 PE=1 SV=1;tr|A0A7I2V659|A0A7I2V6” [3]
“tr|A0A139WNX9|A0A139WNX9_TRICA Arginine kinase OS=Tribolium castaneum
OX=7070 GN=TcasGA2_TC030882 PE=2 SV=1”
[4] “tr|D6W6D2|D6W6D2_TRICA Fatty acid synthase-like Protein
OS=Tribolium castaneum OX=7070 GN=TcasGA2_TC011522 PE=4 SV=1”
[5] “tr|D6W849|D6W849_TRICA Transketolase-like protein 2 OS=Tribolium
castaneum OX=7070 GN=TcasGA2_TC004789 PE=4 SV=1”
[6] “tr|D6WF19|D6WF19_TRICA Actin-87E-like Protein OS=Tribolium
castaneum OX=7070 GN=TcasGA2_TC003326 PE=3 SV=1”
[7] “tr|D6WUQ7|D6WUQ7_TRICA Larval serum protein 2-like Protein
OS=Tribolium castaneum OX=7070 GN=TcasGA2_TC005377 PE=4 SV=2”
[8] “tr|D6WUQ8|D6WUQ8_TRICA Larval serum protein 2-like Protein
OS=Tribolium castaneum OX=7070 GN=TcasGA2_TC005376 PE=4 SV=1”
[9] “tr|D6WUQ9|D6WUQ9_TRICA Larval serum protein 1 gamma chain-like
Protein OS=Tribolium castaneum OX=7070 GN=TcasGA2_TC006769 PE=4
SV=1”
[10] “sp|P0DUB6|AMY1A_HUMAN Alpha-amylase 1A OS=Homo sapiens OX=9606
GN=AMY1A PE=1 SV=1;sp|P0DTE8|AMY1C_HUMAN Alpha-amylase 1C OS=Homo
sapiens OX=9606 GN=AMY1C PE=1 SV=1;sp|P0DTE7|AMY1B_HUMAN Alpha-amylase
1B OS=Homo sapiens OX=9606 GN=AMY1B PE=1 SV=1;sp|P19961|”
“n [1]”tr|A0A139WAN8|A0A139WAN8_TRICA Tropomyosin-1, isoforms
9A/A/B-like Protein OS=Tribolium castaneum OX=7070 GN=TcasGA2_TC031441
PE=3 SV=1;tr|A0A139WAL9|A0A139WAL9_TRICA Tropomyosin-1, isoforms
9A/A/B-like Protein OS=Tribolium castaneum OX=7070 GN=TcasGA2_TC0” [2]
“tr|A0A139WAP9|A0A139WAP9_TRICA Tropomyosin-2-like Protein OS=Tribolium
castaneum OX=7070 GN=TcasGA2_TC011461 PE=3 SV=1”
[3] “tr|A0A139WDY2|A0A139WDY2_TRICA Myosin heavy chain, muscle-like
Protein OS=Tribolium castaneum OX=7070 GN=TcasGA2_TC034002 PE=3
SV=1;tr|A0A139WE98|A0A139WE98_TRICA Myosin heavy chain, muscle-like
Protein OS=Tribolium castaneum OX=7070 GN=TcasGA2_TC034002 PE” [4]
“tr|A0A139WE70|A0A139WE70_TRICA Myosin heavy chain, muscle-like Protein
OS=Tribolium castaneum OX=7070 GN=TcasGA2_TC034001 PE=3 SV=1”
[5] “tr|A0A139WGR3|A0A139WGR3_TRICA Apolipophorins-like protein
OS=Tribolium castaneum OX=7070 GN=TcasGA2_TC034740 PE=4 SV=1”
[6] “tr|D2A2S3|D2A2S3_TRICA Uncharacterized protein OS=Tribolium
castaneum OX=7070 GN=TcasGA2_TC007015 PE=4 SV=1”
[7] “tr|D2A4R3|D2A4R3_TRICA ATP synthase subunit beta OS=Tribolium
castaneum OX=7070 GN=TcasGA2_TC015322 PE=3 SV=1”
[8] “tr|D6WF19|D6WF19_TRICA Actin-87E-like Protein OS=Tribolium
castaneum OX=7070 GN=TcasGA2_TC003326 PE=3 SV=1”
[9] “tr|D6WUQ7|D6WUQ7_TRICA Larval serum protein 2-like Protein
OS=Tribolium castaneum OX=7070 GN=TcasGA2_TC005377 PE=4 SV=2”
[10] “tr|D6WUQ8|D6WUQ8_TRICA Larval serum protein 2-like Protein
OS=Tribolium castaneum OX=7070 GN=TcasGA2_TC005376 PE=4 SV=1”
[11] “tr|D6WUQ9|D6WUQ9_TRICA Larval serum protein 1 gamma chain-like
Protein OS=Tribolium castaneum OX=7070 GN=TcasGA2_TC006769 PE=4
SV=1”
[12] “tr|D6X073|D6X073_TRICA Uncharacterized protein OS=Tribolium
castaneum OX=7070 GN=TcasGA2_TC012207 PE=4
SV=1;tr|A0A139WC75|A0A139WC75_TRICA Uncharacterized protein OS=Tribolium
castaneum OX=7070 GN=TcasGA2_TC012207 PE=4 SV=1”
[13] “sp|P0DUB6|AMY1A_HUMAN Alpha-amylase 1A OS=Homo sapiens OX=9606
GN=AMY1A PE=1 SV=1;sp|P0DTE8|AMY1C_HUMAN Alpha-amylase 1C OS=Homo
sapiens OX=9606 GN=AMY1C PE=1 SV=1;sp|P0DTE7|AMY1B_HUMAN Alpha-amylase
1B OS=Homo sapiens OX=9606 GN=AMY1B PE=1 SV=1;sp|P19961|”
“n[1]”tr|D6WNL2|D6WNL2_TRICA ATP synthase subunit delta,
mitochondrial-like Protein OS=Tribolium castaneum OX=7070
GN=TcasGA2_TC013931 PE=3 SV=1”
[2] “tr|D6WQ50|D6WQ50_TRICA Uncharacterized protein OS=Tribolium
castaneum OX=7070 GN=TcasGA2_TC009873 PE=4 SV=1”
[3] “tr|D6X073|D6X073_TRICA Uncharacterized protein OS=Tribolium
castaneum OX=7070 GN=TcasGA2_TC012207 PE=4
SV=1;tr|A0A139WC75|A0A139WC75_TRICA Uncharacterized protein OS=Tribolium
castaneum OX=7070 GN=TcasGA2_TC012207 PE=4 SV=1” [4]
“tr|D7ELA3|D7ELA3_TRICA Uncharacterized protein OS=Tribolium castaneum
OX=7070 GN=TcasGA2_TC008553 PE=4 SV=1”
“n[1]”tr|D1ZZT6|D1ZZT6_TRICA Uncharacterized protein OS=Tribolium
castaneum OX=7070 GN=TcasGA2_TC007402 PE=4 SV=1”
[2] “tr|D6WF19|D6WF19_TRICA Actin-87E-like Protein OS=Tribolium
castaneum OX=7070 GN=TcasGA2_TC003326 PE=3 SV=1”
[3] “tr|D6WI67|D6WI67_TRICA Uncharacterized protein OS=Tribolium
castaneum OX=7070 GN=TcasGA2_TC003599 PE=4 SV=1;tr|D6WI66|D6WI66_TRICA
Uncharacterized protein OS=Tribolium castaneum OX=7070
GN=TcasGA2_TC002841 PE=4 SV=1”
[4] “tr|D6WUQ8|D6WUQ8_TRICA Larval serum protein 2-like Protein
OS=Tribolium castaneum OX=7070 GN=TcasGA2_TC005376 PE=4 SV=1”
[5] “tr|D6WUQ9|D6WUQ9_TRICA Larval serum protein 1 gamma chain-like
Protein OS=Tribolium castaneum OX=7070 GN=TcasGA2_TC006769 PE=4
SV=1”
[6] “tr|D6X073|D6X073_TRICA Uncharacterized protein OS=Tribolium
castaneum OX=7070 GN=TcasGA2_TC012207 PE=4
SV=1;tr|A0A139WC75|A0A139WC75_TRICA Uncharacterized protein OS=Tribolium
castaneum OX=7070 GN=TcasGA2_TC012207 PE=4 SV=1”
[7] “tr|D7ELA3|D7ELA3_TRICA Uncharacterized protein OS=Tribolium
castaneum OX=7070 GN=TcasGA2_TC008553 PE=4 SV=1”
[8] “sp|P0DUB6|AMY1A_HUMAN Alpha-amylase 1A OS=Homo sapiens OX=9606
GN=AMY1A PE=1 SV=1;sp|P0DTE8|AMY1C_HUMAN Alpha-amylase 1C OS=Homo
sapiens OX=9606 GN=AMY1C PE=1 SV=1;sp|P0DTE7|AMY1B_HUMAN Alpha-amylase
1B OS=Homo sapiens OX=9606 GN=AMY1B PE=1 SV=1;sp|P19961|”
## [1] "Time used for analysis: 0.33 minutes"